Pumpkin Cream Cheese Muffins Recipe
There is something incredibly comforting and festive about Pumpkin Cream Cheese Muffins. These muffins strike the perfect balance between spiced pumpkin richness and a luscious, tangy cream cheese swirl that makes each bite feel like a cozy autumn hug. Whether you’re craving a grab-and-go breakfast or a delightful afternoon treat, these muffins combine familiar fall flavors with a moist, tender crumb that’s sure to become a favorite in your baking repertoire.

Ingredients You’ll Need
Gathering these simple but essential ingredients will set you up for success. Each one plays an important role, whether it’s giving the muffins their characteristic warm spice, tender texture, or that irresistibly creamy swirl.
- All-purpose flour (1 3/4 cups): The base of your muffins, creating structure and a soft crumb.
- Pumpkin spice (1 tablespoon): Brings classic autumn warmth with cinnamon, nutmeg, and clove.
- Baking soda (1 teaspoon): Helps your muffins rise beautifully and stay fluffy.
- Salt (1/2 teaspoon): Balances sweetness and enhances all the other flavors.
- Pumpkin puree (1 15-oz can): Adds moisture, color, and that unmistakable pumpkin flavor.
- Granulated sugar (1 cup): Sweetens the pumpkin batter just right.
- Brown sugar (1/2 cup, packed): Infuses a subtle molasses note, making the muffins richer and more complex.
- Large eggs (2): Bind everything together and add tenderness.
- Vegetable oil (1/2 cup): Keeps the muffins moist without heaviness; melted butter can work too.
- Vanilla extract (1 tablespoon): Enhances the sweet spices and cream cheese filling perfectly.
- Cream cheese (8 oz, room temperature): The star of the creamy swirl that defines these muffins.
- Granulated sugar for filling (1/4 cup): Sweetens the cream cheese layer without overpowering it.
- Large egg yolk (1, room temperature): Adds richness and helps create a smooth filling texture.
- Vanilla extract for filling (2 teaspoons): Rounds out the cream cheese flavor with a lovely aroma.
How to Make Pumpkin Cream Cheese Muffins
Step 1: Prepare Your Oven and Muffin Pan
Preheat your oven to 375 degrees Fahrenheit and line your muffin tin with paper baking cups. This simple first step ensures that your muffins will bake evenly and be easy to remove once done, setting you up for smooth baking.
Step 2: Mix Dry Ingredients
In a medium bowl, whisk together the all-purpose flour, pumpkin spice, baking soda, and salt until well combined. This creates the base mix that holds all the wonderful flavors, ensuring each muffin has a consistent and perfectly spiced crumb.
Step 3: Combine Wet Ingredients for the Pumpkin Batter
In a large bowl, whisk together the pumpkin puree, granulated sugar, and brown sugar until smooth. Then, beat in the eggs, vegetable oil, and vanilla extract. Slowly add the dry ingredients, whisking gently until there are no lumps, but be careful not to overmix to keep your muffins tender and light.
Step 4: Prepare the Cream Cheese Filling
Beat the cream cheese in a medium bowl until it becomes smooth and creamy. Add in 1/4 cup of granulated sugar, the egg yolk, and 2 teaspoons vanilla extract, then continue to mix until everything is fully incorporated with no lumps. This luscious filling is what sets these Pumpkin Cream Cheese Muffins apart from your average pumpkin treat.
Step 5: Assemble the Muffins
Fill each muffin cup about three-quarters full with the pumpkin batter. Spoon approximately one tablespoon of the cream cheese mixture onto the center of each muffin. Use a toothpick to gently swirl the cream cheese into the batter for a lovely marbled effect. If you’re short on time, simply drop dollops into the center, and it will bake up just as delicious.
Step 6: Bake and Cool
Bake your muffins for 18 to 20 minutes until a toothpick inserted into the pumpkin part comes out clean with only a few moist crumbs attached. Let the muffins cool for about 10 minutes in the pan before removing them. Serve warm for the best melt-in-your-mouth experience or cool completely if you’re storing them for later.
How to Serve Pumpkin Cream Cheese Muffins

Garnishes
These muffins are beautiful on their own, but a light dusting of powdered sugar or a sprinkling of chopped toasted pecans adds an elegant touch. You could even brush the tops lightly with melted butter and cinnamon sugar for an extra sparkle and crunch.
Side Dishes
Pair your Pumpkin Cream Cheese Muffins with a cup of spiced chai latte or a robust coffee for a warm, indulgent combo. For a fuller breakfast, serve alongside fresh fruit or a dollop of Greek yogurt to balance the sweetness with some tang and creaminess.
Creative Ways to Present
Want to impress your guests? Place the muffins in a decorative basket lined with a cozy autumn-themed cloth. You can even serve them with small ramekins of honey butter or maple syrup on the side, making each bite customizable and fun.
Make Ahead and Storage
Storing Leftovers
Keep leftover Pumpkin Cream Cheese Muffins fresh by storing them in an airtight container at room temperature for up to two days. After that, refrigeration extends their life up to a week. Make sure muffins are completely cool before sealing to avoid sogginess.
Freezing
These muffins freeze beautifully! Wrap each muffin tightly in plastic wrap, then place them together in a freezer-safe bag or container. They’ll keep in the freezer for up to three months, giving you a quick breakfast or snack anytime the pumpkin craving hits.
Reheating
Reheat frozen muffins by unwrapping them and microwaving for about 20 seconds or warming them in a 350-degree oven for 10 minutes. This brings back their soft texture and fresh-baked taste, as if they were just made!
FAQs
Can I substitute the pumpkin spice with individual spices?
Absolutely! If you don’t have pumpkin spice on hand, combine 1 teaspoon cinnamon, 1/4 teaspoon nutmeg, 1/4 teaspoon ginger, and a pinch of cloves or allspice for a similar warm flavor profile.
Is it possible to make these muffins gluten-free?
Yes, you can replace the all-purpose flour with a gluten-free flour blend that measures cup-for-cup. Just make sure your blend contains xanthan gum or add it separately to maintain texture.
Can I use fresh pumpkin instead of canned?
Fresh pumpkin can be used, but it requires more prep. Roast and puree fresh pumpkin until smooth, and measure out the same volume as canned puree (approximately 1 3/4 cups). The fresh version may be slightly less moist, so watch the batter consistency.
What’s the best way to swirl the cream cheese filling?
After dropping the cream cheese on top of each muffin, use a toothpick to gently swirl it just a bit into the batter—no need for perfect blending. The goal is a marbled effect that looks beautiful and bakes up with distinct layers of flavor.
Can I make these muffins dairy-free?
You can substitute the cream cheese with a dairy-free alternative and use plant-based milk in place of any dairy you might add. The texture and flavor may vary a bit, but you’ll still get a delicious pumpkin muffin experience.
Final Thoughts
There’s something undeniably special about sharing homemade baked goods that bring warmth and comfort, and these Pumpkin Cream Cheese Muffins fit that description perfectly. With their delightful balance of spicy pumpkin and creamy filling, they’re sure to become a beloved staple whether it’s breakfast, snack time, or even a holiday dessert. I wholeheartedly encourage you to give this recipe a try—you might just find they become your new favorite way to celebrate fall flavors!
PrintPumpkin Cream Cheese Muffins Recipe
These Pumpkin Cream Cheese Muffins are a delightful autumn treat, combining the rich flavors of spiced pumpkin with a creamy, tangy cream cheese swirl. Moist and tender, these muffins make a perfect breakfast or dessert option, and the swirl adds a beautiful marbled effect for an impressive presentation.
- Prep Time: 15 minutes
- Cook Time: 18-20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Snack, Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Muffin Batter
- 1 3/4 cups all purpose flour
- 1 tablespoon pumpkin spice
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 1 (15 oz) can pumpkin puree
- 1 cup granulated sugar
- 1/2 cup packed brown sugar
- 2 large eggs
- 1/2 cup vegetable oil (or melted and cooled butter)
- 1 tablespoon vanilla extract
Cream Cheese Swirl
- 8 oz cream cheese (room temperature)
- 1/4 cup granulated sugar
- 1 large egg yolk (room temperature)
- 2 teaspoons vanilla extract
Instructions
- Preheat and Prepare Pans: Preheat your oven to 375°F (190°C). Line a muffin pan with paper baking cups, or grease if preferred, then set it aside.
- Mix Dry Ingredients: In a medium bowl, whisk together the all purpose flour, pumpkin spice, baking soda, and salt until these ingredients are well combined and uniform in texture.
- Combine Wet Ingredients and Batter: In a large bowl, whisk together the pumpkin puree, granulated sugar, and brown sugar until smooth. Beat in the eggs, vegetable oil, and vanilla extract. Gradually add the dry flour mixture, whisking slowly until just combined and no lumps remain. Be careful not to overmix to keep muffins tender. Spoon the batter into the muffin cups, filling each about three-quarters full.
- Prepare Cream Cheese Swirl: In a separate medium bowl, beat the cream cheese until smooth and creamy. Add the granulated sugar, egg yolk, and vanilla extract, then beat again until the mixture is well combined and creamy.
- Add Cream Cheese to Muffins: Drop about 1 tablespoon of the cream cheese mixture on top of each muffin batter portion. Using a toothpick, gently swirl the cream cheese into the pumpkin batter to create a marbled effect. Swirling is optional, but it results in a prettier baked muffin.
- Bake: Place the muffin pan in the oven and bake for 18 to 20 minutes. Check doneness by inserting a toothpick into the pumpkin part of the muffin — it should come out clean or with just a few moist crumbs attached. Avoid overbaking.
- Cool and Serve: Let the muffins cool in the pan for 10 minutes before removing them to a wire rack. Serve warm or allow to cool completely before storing.
Notes
- You can substitute melted and cooled butter for the vegetable oil to add a richer flavor.
- Ensure cream cheese and egg yolk are at room temperature for a smooth, even swirl.
- Swirling the cream cheese is optional but makes a visually appealing marble effect.
- Muffins store well in an airtight container at room temperature for up to 3 days or refrigerated for up to a week.
- Reheat muffins briefly in the microwave for a warm, fresh-baked experience.
- For an extra festive touch, sprinkle chopped nuts or cinnamon sugar on the cream cheese swirl before baking.
Nutrition
- Serving Size: 1 muffin
- Calories: 280
- Sugar: 18g
- Sodium: 210mg
- Fat: 14g
- Saturated Fat: 4g
- Unsaturated Fat: 9g
- Trans Fat: 0g
- Carbohydrates: 34g
- Fiber: 2g
- Protein: 4g
- Cholesterol: 55mg
Keywords: pumpkin muffins, cream cheese muffins, autumn recipes, fall baking, spiced pumpkin, breakfast muffins