Pumpkin Cheesecake Thumbprints Recipe
These Pumpkin Cheesecake Thumbprints offer a delightful combination of soft, spiced cookies filled with creamy pumpkin cheesecake filling. Perfect for fall gatherings or a cozy treat, they bring seasonal flavors in every bite.

Ingredients
- Cooking spray
- 2 1/2 cups all-purpose flour
- 1 teaspoon pumpkin pie spice, plus more for sprinkling
- 1 teaspoon baking soda
- 1/2 teaspoon kosher salt
- 1/4 teaspoon baking powder
- 1 cup (2 sticks) butter, softened
- 2/3 cup packed brown sugar
- 1/3 cup granulated sugar
- 1 large egg
- 1 teaspoon pure vanilla extract
- 1 cup pumpkin puree
- 4 tablespoons butter, softened (for filling)
- 4 ounces cream cheese, room temperature
- 2 cups powdered sugar
Instructions
- Step 1: Preheat your oven to 350°F (175°C). Line two baking sheets with parchment paper and lightly grease them with cooking spray.
- Step 2: In a medium bowl, whisk together the flour, pumpkin pie spice, baking soda, salt, and baking powder until well combined.
- Step 3: In a large bowl, cream the softened butter with the brown sugar and granulated sugar until the mixture is light and fluffy. Beat in the egg and vanilla extract, then mix in the pumpkin puree until smooth.
- Step 4: Gradually fold the dry ingredients into the wet mixture until just combined.
- Step 5: Drop rounded tablespoonfuls of dough about 2 inches apart onto the prepared baking sheets.
- Step 6: Bake the cookies for 8 minutes. Remove from the oven and, using a greased teaspoon, gently press an indentation into the center of each cookie. Return to the oven and bake for about 7 more minutes, until the edges are golden.
- Step 7: If the indentations puff up during baking, press them down gently while the cookies are still warm. Let the cookies cool on the baking sheets for 2 minutes before transferring them to wire racks to cool completely.
- Step 8: Make the filling by beating together the softened butter, cream cheese, powdered sugar, and 1 teaspoon vanilla extract in a medium bowl until smooth and creamy.
- Step 9: Transfer the filling to a pastry bag or a resealable plastic bag with the tip cut off, and pipe the filling into the cooled cookie indentations. Sprinkle a little extra pumpkin pie spice on top to finish.
Tips & Variations
- For a stronger spice flavor, add a pinch of cinnamon or nutmeg to the pumpkin mixture.
- If you don’t have a pastry bag, use a small spoon or a zip-top bag with a corner cut off to pipe the filling.
- Chill the cookie dough for 30 minutes if it’s too soft to handle easily.
- Use canned pumpkin puree for convenience, but avoid pumpkin pie filling which contains added sugars and spices.
Storage
Store the pumpkin cheesecake thumbprints in an airtight container in the refrigerator for up to 4 days. Let them come to room temperature or warm slightly before serving for the best flavor and texture.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I freeze these cookies?
Yes, you can freeze the baked cookies without filling in an airtight container for up to 3 months. Thaw completely before adding the filling.
Can I use a different spice blend?
Absolutely! Pumpkin pie spice can be substituted with a mixture of cinnamon, nutmeg, and ginger to your taste preference.
PrintPumpkin Cheesecake Thumbprints Recipe
These Pumpkin Cheesecake Thumbprints are delightful fall treats that combine the warm spices of pumpkin pie with a creamy cheesecake filling. Soft and flavorful cookies feature a pumpkin-infused dough with a perfectly sweet and tangy cream cheese center, making them an ideal dessert for autumn gatherings and holiday celebrations.
- Prep Time: 20 minutes
- Cook Time: 15 minutes
- Total Time: 35 minutes
- Yield: About 24 cookies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Cookie Dough
- Cooking spray (for greasing baking sheets)
- 2 1/2 cups all-purpose flour
- 1 teaspoon pumpkin pie spice, plus more for sprinkling
- 1 teaspoon baking soda
- 1/2 teaspoon kosher salt
- 1/4 teaspoon baking powder
- 1 cup (2 sticks) unsalted butter, softened
- 2/3 cup packed brown sugar
- 1/3 cup granulated sugar
- 1 large egg
- 1 teaspoon pure vanilla extract
- 1 cup pumpkin puree
Filling
- 4 tablespoons unsalted butter, softened
- 4 ounces cream cheese, room temperature
- 2 cups powdered sugar
- 1 teaspoon vanilla extract
Instructions
- Preheat and prepare baking sheets: Preheat your oven to 350°F (175°C). Line two baking sheets with parchment paper and lightly grease them with cooking spray to prevent sticking.
- Mix dry ingredients: In a medium bowl, whisk together the all-purpose flour, pumpkin pie spice, baking soda, kosher salt, and baking powder until well combined. Set aside.
- Cream butter and sugars: In a large bowl, beat the softened butter, brown sugar, and granulated sugar together until the mixture is light and fluffy. This usually takes about 3-4 minutes.
- Add wet ingredients to sugar mixture: Beat in the egg and vanilla extract until fully incorporated. Then mix in the pumpkin puree until smooth and homogeneous.
- Combine dry and wet ingredients: Gradually fold the dry ingredients into the wet mixture until just combined. Be careful not to overmix to keep cookies tender.
- Shape cookies: Drop rounded tablespoonfuls of dough onto the prepared baking sheets, spacing them about 2 inches apart to allow for spreading.
- Initial bake and create thumbprints: Bake the cookies for 8 minutes. Remove from the oven and quickly use a greased teaspoon to press indentations into the center of each cookie. The dough will be hot, so work gently.
- Bake until golden: Return the baking sheets to the oven and continue baking for about 7 more minutes, or until the edges of the cookies are golden and the centers have set.
- Adjust indentations if needed and cool: If the indentations have puffed up during baking, press them down gently while still warm. Let the cookies cool on the baking sheet for 2 minutes, then transfer them to wire racks to cool completely.
- Make the cheesecake filling: In a medium bowl, beat the softened butter, cream cheese, powdered sugar, and vanilla extract together until the mixture is smooth, creamy, and free of lumps.
- Fill the cookies: Transfer the cheesecake filling into a pastry bag or plastic bag with a corner cut off. Pipe the filling into the cooled indentations on each cookie.
- Garnish and serve: Sprinkle a little extra pumpkin pie spice on top of the filled cookies for added flavor and a beautiful finishing touch. Serve and enjoy!
Notes
- Ensure the butter and cream cheese for the filling are at room temperature to achieve a smooth texture.
- If you do not have a pastry bag, a zip-top plastic bag with a small corner cut off works well for piping the filling.
- Store leftover cookies in an airtight container in the refrigerator for up to 5 days.
- For a dairy-free version, substitute butter and cream cheese with plant-based alternatives.
- These cookies freeze well; freeze on a baking sheet then transfer to a freezer bag, thaw before filling.
Keywords: pumpkin cheesecake thumbprints, pumpkin cookies, fall dessert, autumn cookies, cream cheese filling, pumpkin pie spice cookies

